PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00280g00098.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 97aa    MW: 11120.4 Da    PI: 8.2233
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00280g00098.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-10347345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT+   +++ +a + + ++   +W+ Iar++g g+++++++ ++ 
  Peaxi162Scf00280g00098.1  3 SWTARQNKKFEEALAIYDKDtsdRWHNIARCVG-GKSAEEVRRHYE 47
                              6********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.0E-7152IPR001005SANT/Myb domain
PROSITE profilePS5129312.587154IPR017884SANT domain
SuperFamilySSF466892.81E-13357IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-5356IPR009057Homeodomain-like
CDDcd001676.60E-9350No hitNo description
PfamPF002491.2E-7347IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASWTARQNK KFEEALAIYD KDTSDRWHNI ARCVGGKSAE EVRRHYELLV KDIMQIENGQ  60
IPLPNYRSTE SNSTGYANQQ SFKSSVLSTS CIHFSFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-303721079RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4578116e-57CU457811.8 S.lycopersicum DNA sequence from clone LE_HBa-132M8 on chromosome 4, complete sequence.
GenBankCU4682396e-57CU468239.4 S.lycopersicum DNA sequence from clone SL_MboI-124K5 on chromosome 4, complete sequence.
GenBankHG9754436e-57HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755166e-57HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771192.12e-48PREDICTED: protein RADIALIS-like 3
RefseqXP_016490582.12e-48PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1736e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLK4BVC97e-45K4BVC9_SOLLC; Uncharacterized protein
STRINGSolyc04g080500.2.12e-44(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-36RAD-like 6